Below are use cases utitlizing PyImageJ and other packages such as
These examples are available in the PyImageJ repository.
More use cases
Here are additional links to some other examples using PyImageJ in other projects.
The pyimagej-dextr repository uses Deep Extreme Cut (DEXTR) to generate ImageJ ROIs via PyImageJ.
PoreSpy, a collection of image analysis tools used to extract information from 3D images of porous materials, uses some ImageJ filters via PyImageJ.
To add your usage of PyImageJ to this list, please submit a pull request!