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🤖 Getting Started with AI

  • Introduction to Google Colab
  • The PyImageJ AI Notebook
  • Prompt Engineering

🚀 Getting Started (Traditional)

  • Installation
  • How to initialize PyImageJ

🪄 How-to guides

  • Tutorial notebooks
  • Using PyImageJ without a screen
  • Troubleshooting

🔬 Use cases

  • imagej-ops
    • 3D Deconvolution
    • Gray Level Co-occurrence Matrices (GLCM)
  • Integration
  • Segmentation
  • Other use cases

🛠️ Development

  • Developing PyImageJ

📚 Reference

  • API
  • Citation
PyImageJ
  • imagej-ops use cases
  • Edit on GitHub

imagej-ops use cases

These are use cases utilizing the imagej-ops framework in PyImageJ workflows.

  • 3D Deconvolution
    • Richardson-Lucy Total Variation Deconvolution with ImageJ2 and imagej-ops
    • Creating a synthetic PSF with the Gibson-Lanni model.
    • Running the RTLV deconvolution op
    • References
  • Gray Level Co-occurrence Matrices (GLCM)
    • Texture analysis with GLCM
    • Using PyImageJ and imagej-ops for GLCM texture analysis
    • References
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