Index

A

active_dataset() (imagej.ImageJPython method) active_image_plus() (imagej.ImageJPython method) active_imageplus() (imagej.ImageJPython method)

active_xarray() (imagej.ImageJPython method) AnnotatedSpaceAddons (class in imagej) argstring() (imagej.ImageJPython method)

C

checkup() (in module doctor) convert module

copy_rai_into_ndarray() (in module images) create_ndarray() (in module images) ctype_to_realtype() (in module convert)

D

debug_to_stderr() (in module doctor) dim_axes (imagej.AnnotatedSpaceAddons property) dims module dims (imagej.ImagePlusAddons property) (imagej.TypedSpaceAddons property)

dims() (imagej.ImageJPython method) doctor module dtype (imagej.RAIOperators property) dtype() (imagej.ImageJPython method) (in module images)

E

EuclideanSpaceAddons (class in imagej)

F

from_java() (imagej.ImageJPython method)

G

GatewayAddons (class in imagej) get_axes() (in module dims) get_axis_types() (in module dims)

get_dims() (in module dims) get_shape() (in module dims) GUI (imagej.Mode attribute)

H

HEADLESS (imagej.Mode attribute)

I

IJ (imagej.GatewayAddons property) image_metadata_to_dict() (in module convert) ImageJPython (class in imagej) imageplus_to_imgplus() (in module convert) ImagePlusAddons (class in imagej) images module imglabeling_to_labeling() (in module convert)

index_img_to_roi_manager() (in module convert) index_img_to_roi_tree() (in module convert) init() (in module imagej) initialize_numpy_image() (imagej.ImageJPython method) INTERACTIVE (imagej.Mode attribute) IntervalAddons (class in imagej) is_arraylike() (in module images) is_memoryarraylike() (in module images) is_xarraylike() (in module images)

J

jargs() (imagej.ImageJPython method) java_to_dataset() (in module convert)

java_to_img() (in module convert) java_to_ndarray() (in module convert) java_to_xarray() (in module convert)

L

labeling_to_imglabeling() (in module convert)

legacy (imagej.GatewayAddons property)

M

metadata_wrapper_to_dict() (in module convert) Mode (class in imagej) module convert dims doctor images stack

N

ndarray_to_dataset() (in module convert) ndarray_to_img() (in module convert)

ndarray_to_xarray() (in module convert) ndim (imagej.EuclideanSpaceAddons property) new_numpy_image() (imagej.ImageJPython method)

P

prioritize_rai_axes_order() (in module dims)

py (imagej.GatewayAddons property)

R

rai_slice() (in module stack) rai_to_numpy() (imagej.ImageJPython method) RAIOperators (class in imagej) realtype_to_ctype() (in module convert) reorganize() (in module dims)

results_table_to_scijava_table() (in module convert) ResultsTable (imagej.GatewayAddons property) RoiManager (imagej.GatewayAddons property) run_macro() (imagej.ImageJPython method) run_plugin() (imagej.ImageJPython method) run_script() (imagej.ImageJPython method)

S

shape (imagej.ImagePlusAddons property) (imagej.IntervalAddons property) show() (imagej.ImageJPython method) squeeze() (imagej.RAIOperators method) stack module supports_ctype_to_realtype() (in module convert)

supports_imglabeling_to_labeling() (in module convert) supports_java_to_ndarray() (in module convert) supports_java_to_xarray() (in module convert) supports_labeling_to_imglabeling() (in module convert) supports_realtype_to_ctype() (in module convert) sync_image() (imagej.ImageJPython method) synchronize_ij1_to_ij2() (imagej.ImageJPython method)

T

T (imagej.RAIOperators property) to_dataset() (imagej.ImageJPython method) to_imageplus() (imagej.ImageJPython method) to_img() (imagej.ImageJPython method)

to_java() (imagej.ImageJPython method) to_xarray() (imagej.ImageJPython method) transpose (imagej.RAIOperators property) TypedSpaceAddons (class in imagej)

W

window_manager() (imagej.ImageJPython method)

WindowManager (imagej.GatewayAddons property)

X

xarray_to_dataset() (in module convert)

xarray_to_img() (in module convert)